KDM6A is the disease causative gene of type 2 Kabuki Syndrome, a rare multisystem disease; it is also a known cancer driver gene, with multiple somatic mutations found in a few cancer types. In this study, we looked at eleven missense variants in lung squamous cell carcinoma, one of the most common lung cancer subtypes, to see how they affect the KDM6A catalytic mechanisms. We found that they influence the interaction with histone H3 and the exposure of the trimethylated Lys27, which is critical for wild-type physiological function to varying degrees, by altering the conformational transition.

KDM6A missense variants hamper H3 histone demethylation in lung squamous cell carcinoma / Biagini, Tommaso; Petrizzelli, Francesco; Bianco, SALVATORE DANIELE; Liorni, Niccolo'; Napoli, Alessandro; Castellana, Stefano; Luigi Vescovi, Angelo; Carella, Massimo; Caputo, Viviana; Mazza, Tommaso. - In: COMPUTATIONAL AND STRUCTURAL BIOTECHNOLOGY JOURNAL. - ISSN 2001-0370. - 20:(2022), pp. 3151-3160. [10.1016/j.csbj.2022.06.041]

KDM6A missense variants hamper H3 histone demethylation in lung squamous cell carcinoma

Tommaso Biagini
Co-primo
;
Francesco Petrizzelli
Co-primo
;
Salvatore Daniele Bianco
;
Niccolo' Liorni;Viviana Caputo
Penultimo
;
2022

Abstract

KDM6A is the disease causative gene of type 2 Kabuki Syndrome, a rare multisystem disease; it is also a known cancer driver gene, with multiple somatic mutations found in a few cancer types. In this study, we looked at eleven missense variants in lung squamous cell carcinoma, one of the most common lung cancer subtypes, to see how they affect the KDM6A catalytic mechanisms. We found that they influence the interaction with histone H3 and the exposure of the trimethylated Lys27, which is critical for wild-type physiological function to varying degrees, by altering the conformational transition.
2022
DCCM, dynamic cross-correlation map; Epigenetics; GaMD, gaussian accelerated molecular dynamics; IDR, intrinsically disordered region; LUSC, lung squamous cell carcinoma; MD, molecular dynamics; Molecular Dynamics simulation; PCA, principal component analysis; PMF, potential of mean force; Pathogenicity estimation; RMSD, root mean squared deviation
01 Pubblicazione su rivista::01a Articolo in rivista
KDM6A missense variants hamper H3 histone demethylation in lung squamous cell carcinoma / Biagini, Tommaso; Petrizzelli, Francesco; Bianco, SALVATORE DANIELE; Liorni, Niccolo'; Napoli, Alessandro; Castellana, Stefano; Luigi Vescovi, Angelo; Carella, Massimo; Caputo, Viviana; Mazza, Tommaso. - In: COMPUTATIONAL AND STRUCTURAL BIOTECHNOLOGY JOURNAL. - ISSN 2001-0370. - 20:(2022), pp. 3151-3160. [10.1016/j.csbj.2022.06.041]
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Utilizza questo identificativo per citare o creare un link a questo documento: https://hdl.handle.net/11573/1651207
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