We present the results of the assessment of the intramolecular residue-residue contact and distance predictions from groups participating in the 14th round of the CASP experiment. The performance of contact prediction methods was evaluated with the measures used in previous CASPs, while distance predictions were assessed based on a new protocol, which considers individual distance pairs as well as the whole predicted distance matrix, using a graph-based framework. The results of the evaluation indicate that predictions by the tFold framework, TripletRes and DeepPotential were the most accurate in both categories. With regards to progress in method performance, the results of the assessment in contact prediction did not reveal any discernible difference when compared to CASP13. Arguably, this could be due to CASP14 FM targets being more challenging than ever before.

Assessing the accuracy of contact and distance predictions in CASP14 / Ruiz-Serra, V; Pontes, C; Milanetti, E; Kryshtafovych, A; Lepore, R; Valencia, A.. - In: PROTEINS. - ISSN 1097-0134. - 89:12(2021), pp. 1888-1900. [10.1002/prot.26248]

Assessing the accuracy of contact and distance predictions in CASP14

Milanetti E;Lepore R
;
2021

Abstract

We present the results of the assessment of the intramolecular residue-residue contact and distance predictions from groups participating in the 14th round of the CASP experiment. The performance of contact prediction methods was evaluated with the measures used in previous CASPs, while distance predictions were assessed based on a new protocol, which considers individual distance pairs as well as the whole predicted distance matrix, using a graph-based framework. The results of the evaluation indicate that predictions by the tFold framework, TripletRes and DeepPotential were the most accurate in both categories. With regards to progress in method performance, the results of the assessment in contact prediction did not reveal any discernible difference when compared to CASP13. Arguably, this could be due to CASP14 FM targets being more challenging than ever before.
2021
CASP14; benchmarking; community-wide experiment; numerical evaluation measures; prediction of residue-residue contact and distance
01 Pubblicazione su rivista::01a Articolo in rivista
Assessing the accuracy of contact and distance predictions in CASP14 / Ruiz-Serra, V; Pontes, C; Milanetti, E; Kryshtafovych, A; Lepore, R; Valencia, A.. - In: PROTEINS. - ISSN 1097-0134. - 89:12(2021), pp. 1888-1900. [10.1002/prot.26248]
File allegati a questo prodotto
File Dimensione Formato  
Ruiz-Serra_Assessing_2021.pdf

accesso aperto

Tipologia: Versione editoriale (versione pubblicata con il layout dell'editore)
Licenza: Creative commons
Dimensione 4.03 MB
Formato Adobe PDF
4.03 MB Adobe PDF

I documenti in IRIS sono protetti da copyright e tutti i diritti sono riservati, salvo diversa indicazione.

Utilizza questo identificativo per citare o creare un link a questo documento: https://hdl.handle.net/11573/1668032
Citazioni
  • ???jsp.display-item.citation.pmc??? 6
  • Scopus 11
  • ???jsp.display-item.citation.isi??? 11
social impact