LEPORE, ROSALBA
LEPORE, ROSALBA
DIPARTIMENTO DI BIOLOGIA E BIOTECNOLOGIE "CHARLES DARWIN"
About the need to make computational models of biological macromolecules available and discoverable
2020 Abriata, La; Lepore, R; Dal Peraro, M
An expanded evaluation of protein function prediction methods shows an improvement in accuracy
2016 Jiang, Yuxiang; Oron, Tal Ronnen; Clark, Wyatt T; Bankapur, Asma R; D'Andrea, Daniel; Lepore, Rosalba; Funk, Christopher S; Kahanda, Indika; Verspoor, Karin M; Ben-Hur, Asa; Koo, Da Chen Emily; Penfold-Brown, Duncan; Shasha, Dennis; Youngs, Noah; Bonneau, Richard; Lin, Alexandra; Sahraeian, Sayed M E; Martelli, Pier Luigi; Profiti, Giuseppe; Casadio, Rita; Cao, Renzhi; Zhong, Zhaolong; Cheng, Jianlin; Altenhoff, Adrian; Skunca, Nives; Dessimoz, Christophe; Dogan, Tunca; Hakala, Kai; Kaewphan, Suwisa; Mehryary, Farrokh; Salakoski, Tapio; Ginter, Filip; Fang, Hai; Smithers, Ben; Oates, Matt; Gough, Julian; Törönen, Petri; Koskinen, Patrik; Holm, Liisa; Chen, Ching-Tai; Hsu, Wen-Lian; Bryson, Kevin; Cozzetto, Domenico; Minneci, Federico; Jones, David T; Chapman, Samuel; Bkc, Dukka; Khan, Ishita K; Kihara, Daisuke; Ofer, Dan; Rappoport, Nadav; Stern, Amos; Cibrian-Uhalte, Elena; Denny, Paul; Foulger, Rebecca E; Hieta, Reija; Legge, Duncan; Lovering, Ruth C; Magrane, Michele; Melidoni, Anna N; Mutowo-Meullenet, Prudence; Pichler, Klemens; Shypitsyna, Aleksandra; Li, Biao; Zakeri, Pooya; Elshal, Sarah; Tranchevent, Léon-Charles; Das, Sayoni; Dawson, Natalie L; Lee, David; Lees, Jonathan G; Sillitoe, Ian; Bhat, Prajwal; Nepusz, Tamás; Romero, Alfonso E; Sasidharan, Rajkumar; Yang, Haixuan; Paccanaro, Alberto; Gillis, Jesse; Sedeño-Cortés, Adriana E; Pavlidis, Paul; Feng, Shou; Cejuela, Juan M; Goldberg, Tatyana; Hamp, Tobias; Richter, Lothar; Salamov, Asaf; Gabaldon, Toni; Marcet-Houben, Marina; Supek, Fran; Gong, Qingtian; Ning, Wei; Zhou, Yuanpeng; Tian, Weidong; Falda, Marco; Fontana, Paolo; Lavezzo, Enrico; Toppo, Stefano; Ferrari, Carlo; Giollo, Manuel; Piovesan, Damiano; Tosatto, Silvio C E; Del Pozo, Angela; Fernández, José M; Maietta, Paolo; Valencia, Alfonso; Tress, Michael L; Benso, Alfredo; Di Carlo, Stefano; Politano, Gianfranco; Savino, Alessandro; Rehman, Hafeez Ur; Re, Matteo; Mesiti, Marco; Valentini, Giorgio; Bargsten, Joachim W; van Dijk, Aalt D J; Gemovic, Branislava; Glisic, Sanja; Perovic, Vladmir; Veljkovic, Veljko; Veljkovic, Nevena; Almeida-E-Silva, Danillo C; Vencio, Ricardo Z N; Sharan, Malvika; Vogel, Jörg; Kansakar, Lakesh; Zhang, Shanshan; Vucetic, Slobodan; Wang, Zheng; Sternberg, Michael J E; Wass, Mark N; Huntley, Rachael P; Martin, Maria J; O'Donovan, Claire; Robinson, Peter N; Moreau, Yves; Tramontano, Anna; Babbitt, Patricia C; Brenner, Steven E; Linial, Michal; Orengo, Christine A; Rost, Burkhard; Greene, Casey S; Mooney, Sean D; Friedberg, Iddo; Radivojac, Predrag
Artemether resistance in vitro is linked to mutations in PfATP6 in travellers returning with Plasmodium falciparum infections.
2012 D. R., Pillai; R., Lau; K., Khairnar; Lepore, Rosalba; Via, Allegra; H. M., Staines; S., Krishna
Assessing the accuracy of contact and distance predictions in CASP14
2021 Ruiz-Serra, V; Pontes, C; Milanetti, E; Kryshtafovych, A; Lepore, R; Valencia, A.
DGLinker: flexible knowledge-graph prediction of disease-gene associations
2021 Hu, J; Lepore, R; Dobson, Rjb; Al-Chalabi, A; Mbean, D; Iacoangeli, A
DISCERNIBLE CELL SURFACE PROTEIN VARIANTS FOR USE IN CELL THERAPY
2022 Lepore, R; Jeker, L; Urlinger, S; Landmann, E; Sinopoli, A; Wiederkehr, A; Devaux, A; Camus, A; Haydn, A; MATTER-MARONE, R
From Genomes to Variant Interpretations Through Protein Structures
2023 Durairaj, J.; Alexander, L. T.; Studer, G.; Tauriello, G.; Prandi, I. G.; Lepore, R.; Chillemi, G.; Schwede, T.
Genome-wide RNA-seq analysis indicates that the DAG1 transcription factor promotes hypocotyl elongation acting on ABA, ethylene and auxin signaling
2018 Lorrai, Riccardo; Gandolfi, Francesco; Boccaccini, Alessandra; Ruta, Veronica; Possenti, Marco; Tramontano, Anna; Costantino, Paolo; Lepore, Rosalba; Vittorioso, Paola
Heterogeneous Infectivity and Pathogenesis of SARS-CoV-2 Variants Beta, Delta and Omicron in Transgenic K18-hACE2 and Wildtype Mice
2022 Tarrés-Freixas, F; Trinité, B; Pons-Grífols, A; Romero-Durana, M; Riveira-Muñoz, E; Ávila-Nieto, C; Pérez, M; Garcia-Vidal, E; Perez-Zsolt, D; Muñoz-Basagoiti, J; Raïch-Regué, D; Izquierdo-Useros, N; Andrés, C; Antón, A; Pumarola, T; Blanco, I; Noguera-Julián, M; Guallar, V; Lepore, R; Valencia, A; Urrea, V; Vergara-Alert, J; Clotet, B; Ballana, E; Carrillo, J; Segalés, J; Blanco, J
Identification of the Schistosoma mansoni Molecular Target for the Antimalarial Drug Artemether
2011 Lepore, Rosalba; Simeoni, Silvia; Raimondo, Domenico; Caroli, Antonia; Tramontano, Anna; Via, Allegra
IMMUNOLOGICALLY DISCERNIBLE CELL SURFACE VARIANTS FOR USE IN CELL THERAPY
2017 Jeker, Lukas; Kornete, Mara; BORDOLI SCHWEDE, Lorenza; Schwede, Torsten; Lepore, Rosalba; MATTER MARONE, Romina; Recher, Mike
Improving the accuracy of the structure prediction of the third hypervariable loop of the heavy chains of antibodies
2014 Abdel Messih, M. A. F.; Lepore, R.; Marcatili, P.; Tramontano, A.
Insights on protein thermal stability: a graph representation of molecular interactions
2019 Miotto, Mattia; Olimpieri, PIER PAOLO; DI RIENZO, Lorenzo; Ambrosetti, Francesco; Corsi, Pietro; Lepore, Rosalba; Tartaglia, Gian Gaetano; Milanetti, Edoardo
Investigation of a potential mechanism for the inhibition of SmTGR by Auranofin and its implications for Plasmodium falciparum inhibition
2012 Caroli, Antonia; Simeoni, Silvia; Lepore, Rosalba; Tramontano, Anna; Via, Allegra
LoopIng: A template-based tool for predicting the structure of protein loops
2015 ABDEL MESSIH, MARIO ALFY FAHMY; Lepore, Rosalba; Tramontano, Anna
Modeling of protein tertiary and quaternary structures based on evolutionary Information
2019 Studer, Gabriel; Tauriello, Gerardo; Bienert, Stefan; Waterhouse, Andrew Mark; Bertoni, Martino; Bordoli, Lorenza; Schwede, Torsten; Lepore, Rosalba
Multistep current signal in protein translocation through graphene nanopores
2015 Bonome, EMMA LETIZIA; Lepore, Rosalba; Raimondo, Domenico; Cecconi, Fabio; Tramontano, Anna; Chinappi, Mauro
Neoantigen prediction and computational perspectives towards clinical benefit: recommendations from the ESMO Precision Medicine Working Group
2020 De Mattos-Arruda, L; Vazquez, M; Finotello, F; Lepore, R; Porta, E; Hundal, J; Amengual-Rigo, P; Ng, C K Y; Valencia, A; Carrillo, J; Chan, T A; Guallar, V; Mcgranahan, N; Blanco, J; Griffith, M
PepComposer: computational design of peptides binding to a given protein surface
2016 Obarska-Kosinska, Agnieszka; Iacoangeli, Alfredo; Lepore, Rosalba; Tramontano, Anna
PIGSPro: prediction of immunoGlobulin structures v2
2017 Lepore, Rosalba; Olimpieri, Pier P; Messih, Mario A; Tramontano, Anna
| Titolo | Data di pubblicazione | Autore(i) | File |
|---|---|---|---|
| About the need to make computational models of biological macromolecules available and discoverable | 2020 | Abriata, La; Lepore, R; Dal Peraro, M | |
| An expanded evaluation of protein function prediction methods shows an improvement in accuracy | 2016 | Jiang, Yuxiang; Oron, Tal Ronnen; Clark, Wyatt T; Bankapur, Asma R; D'Andrea, Daniel; Lepore, Rosalba; Funk, Christopher S; Kahanda, Indika; Verspoor, Karin M; Ben-Hur, Asa; Koo, Da Chen Emily; Penfold-Brown, Duncan; Shasha, Dennis; Youngs, Noah; Bonneau, Richard; Lin, Alexandra; Sahraeian, Sayed M E; Martelli, Pier Luigi; Profiti, Giuseppe; Casadio, Rita; Cao, Renzhi; Zhong, Zhaolong; Cheng, Jianlin; Altenhoff, Adrian; Skunca, Nives; Dessimoz, Christophe; Dogan, Tunca; Hakala, Kai; Kaewphan, Suwisa; Mehryary, Farrokh; Salakoski, Tapio; Ginter, Filip; Fang, Hai; Smithers, Ben; Oates, Matt; Gough, Julian; Törönen, Petri; Koskinen, Patrik; Holm, Liisa; Chen, Ching-Tai; Hsu, Wen-Lian; Bryson, Kevin; Cozzetto, Domenico; Minneci, Federico; Jones, David T; Chapman, Samuel; Bkc, Dukka; Khan, Ishita K; Kihara, Daisuke; Ofer, Dan; Rappoport, Nadav; Stern, Amos; Cibrian-Uhalte, Elena; Denny, Paul; Foulger, Rebecca E; Hieta, Reija; Legge, Duncan; Lovering, Ruth C; Magrane, Michele; Melidoni, Anna N; Mutowo-Meullenet, Prudence; Pichler, Klemens; Shypitsyna, Aleksandra; Li, Biao; Zakeri, Pooya; Elshal, Sarah; Tranchevent, Léon-Charles; Das, Sayoni; Dawson, Natalie L; Lee, David; Lees, Jonathan G; Sillitoe, Ian; Bhat, Prajwal; Nepusz, Tamás; Romero, Alfonso E; Sasidharan, Rajkumar; Yang, Haixuan; Paccanaro, Alberto; Gillis, Jesse; Sedeño-Cortés, Adriana E; Pavlidis, Paul; Feng, Shou; Cejuela, Juan M; Goldberg, Tatyana; Hamp, Tobias; Richter, Lothar; Salamov, Asaf; Gabaldon, Toni; Marcet-Houben, Marina; Supek, Fran; Gong, Qingtian; Ning, Wei; Zhou, Yuanpeng; Tian, Weidong; Falda, Marco; Fontana, Paolo; Lavezzo, Enrico; Toppo, Stefano; Ferrari, Carlo; Giollo, Manuel; Piovesan, Damiano; Tosatto, Silvio C E; Del Pozo, Angela; Fernández, José M; Maietta, Paolo; Valencia, Alfonso; Tress, Michael L; Benso, Alfredo; Di Carlo, Stefano; Politano, Gianfranco; Savino, Alessandro; Rehman, Hafeez Ur; Re, Matteo; Mesiti, Marco; Valentini, Giorgio; Bargsten, Joachim W; van Dijk, Aalt D J; Gemovic, Branislava; Glisic, Sanja; Perovic, Vladmir; Veljkovic, Veljko; Veljkovic, Nevena; Almeida-E-Silva, Danillo C; Vencio, Ricardo Z N; Sharan, Malvika; Vogel, Jörg; Kansakar, Lakesh; Zhang, Shanshan; Vucetic, Slobodan; Wang, Zheng; Sternberg, Michael J E; Wass, Mark N; Huntley, Rachael P; Martin, Maria J; O'Donovan, Claire; Robinson, Peter N; Moreau, Yves; Tramontano, Anna; Babbitt, Patricia C; Brenner, Steven E; Linial, Michal; Orengo, Christine A; Rost, Burkhard; Greene, Casey S; Mooney, Sean D; Friedberg, Iddo; Radivojac, Predrag | |
| Artemether resistance in vitro is linked to mutations in PfATP6 in travellers returning with Plasmodium falciparum infections. | 2012 | D. R., Pillai; R., Lau; K., Khairnar; Lepore, Rosalba; Via, Allegra; H. M., Staines; S., Krishna | |
| Assessing the accuracy of contact and distance predictions in CASP14 | 2021 | Ruiz-Serra, V; Pontes, C; Milanetti, E; Kryshtafovych, A; Lepore, R; Valencia, A. | |
| DGLinker: flexible knowledge-graph prediction of disease-gene associations | 2021 | Hu, J; Lepore, R; Dobson, Rjb; Al-Chalabi, A; Mbean, D; Iacoangeli, A | |
| DISCERNIBLE CELL SURFACE PROTEIN VARIANTS FOR USE IN CELL THERAPY | 2022 | Lepore, R; Jeker, L; Urlinger, S; Landmann, E; Sinopoli, A; Wiederkehr, A; Devaux, A; Camus, A; Haydn, A; MATTER-MARONE, R | |
| From Genomes to Variant Interpretations Through Protein Structures | 2023 | Durairaj, J.; Alexander, L. T.; Studer, G.; Tauriello, G.; Prandi, I. G.; Lepore, R.; Chillemi, G.; Schwede, T. | |
| Genome-wide RNA-seq analysis indicates that the DAG1 transcription factor promotes hypocotyl elongation acting on ABA, ethylene and auxin signaling | 2018 | Lorrai, Riccardo; Gandolfi, Francesco; Boccaccini, Alessandra; Ruta, Veronica; Possenti, Marco; Tramontano, Anna; Costantino, Paolo; Lepore, Rosalba; Vittorioso, Paola | |
| Heterogeneous Infectivity and Pathogenesis of SARS-CoV-2 Variants Beta, Delta and Omicron in Transgenic K18-hACE2 and Wildtype Mice | 2022 | Tarrés-Freixas, F; Trinité, B; Pons-Grífols, A; Romero-Durana, M; Riveira-Muñoz, E; Ávila-Nieto, C; Pérez, M; Garcia-Vidal, E; Perez-Zsolt, D; Muñoz-Basagoiti, J; Raïch-Regué, D; Izquierdo-Useros, N; Andrés, C; Antón, A; Pumarola, T; Blanco, I; Noguera-Julián, M; Guallar, V; Lepore, R; Valencia, A; Urrea, V; Vergara-Alert, J; Clotet, B; Ballana, E; Carrillo, J; Segalés, J; Blanco, J | |
| Identification of the Schistosoma mansoni Molecular Target for the Antimalarial Drug Artemether | 2011 | Lepore, Rosalba; Simeoni, Silvia; Raimondo, Domenico; Caroli, Antonia; Tramontano, Anna; Via, Allegra | |
| IMMUNOLOGICALLY DISCERNIBLE CELL SURFACE VARIANTS FOR USE IN CELL THERAPY | 2017 | Jeker, Lukas; Kornete, Mara; BORDOLI SCHWEDE, Lorenza; Schwede, Torsten; Lepore, Rosalba; MATTER MARONE, Romina; Recher, Mike | |
| Improving the accuracy of the structure prediction of the third hypervariable loop of the heavy chains of antibodies | 2014 | Abdel Messih, M. A. F.; Lepore, R.; Marcatili, P.; Tramontano, A. | |
| Insights on protein thermal stability: a graph representation of molecular interactions | 2019 | Miotto, Mattia; Olimpieri, PIER PAOLO; DI RIENZO, Lorenzo; Ambrosetti, Francesco; Corsi, Pietro; Lepore, Rosalba; Tartaglia, Gian Gaetano; Milanetti, Edoardo | |
| Investigation of a potential mechanism for the inhibition of SmTGR by Auranofin and its implications for Plasmodium falciparum inhibition | 2012 | Caroli, Antonia; Simeoni, Silvia; Lepore, Rosalba; Tramontano, Anna; Via, Allegra | |
| LoopIng: A template-based tool for predicting the structure of protein loops | 2015 | ABDEL MESSIH, MARIO ALFY FAHMY; Lepore, Rosalba; Tramontano, Anna | |
| Modeling of protein tertiary and quaternary structures based on evolutionary Information | 2019 | Studer, Gabriel; Tauriello, Gerardo; Bienert, Stefan; Waterhouse, Andrew Mark; Bertoni, Martino; Bordoli, Lorenza; Schwede, Torsten; Lepore, Rosalba | |
| Multistep current signal in protein translocation through graphene nanopores | 2015 | Bonome, EMMA LETIZIA; Lepore, Rosalba; Raimondo, Domenico; Cecconi, Fabio; Tramontano, Anna; Chinappi, Mauro | |
| Neoantigen prediction and computational perspectives towards clinical benefit: recommendations from the ESMO Precision Medicine Working Group | 2020 | De Mattos-Arruda, L; Vazquez, M; Finotello, F; Lepore, R; Porta, E; Hundal, J; Amengual-Rigo, P; Ng, C K Y; Valencia, A; Carrillo, J; Chan, T A; Guallar, V; Mcgranahan, N; Blanco, J; Griffith, M | |
| PepComposer: computational design of peptides binding to a given protein surface | 2016 | Obarska-Kosinska, Agnieszka; Iacoangeli, Alfredo; Lepore, Rosalba; Tramontano, Anna | |
| PIGSPro: prediction of immunoGlobulin structures v2 | 2017 | Lepore, Rosalba; Olimpieri, Pier P; Messih, Mario A; Tramontano, Anna |