The recent finding of functional motifs (by Uri Alon an co-workers) in gene regulatory networks has provided an important interpretative tool for systems biology. Despite the available models are made of continuous-time ordinary differential equations, the experimental data needed to validate such motifs in living cells are inherently discrete in time. Moreover, the technology is currently very expensive, so that an accurate choice of a limited number of samples is mandatory. In this paper we investigate the dynamical properties of network motifs under sampling and provide simple rules for choosing the appropriate sampling rate which preserves peculiar dynamical features for the most common network motifs.

Discrete-time models for gene transcriptional regulation networks / Cacace, Filippo; Farina, Lorenzo; Germani, Alfredo; Palumbo, Pasquale. - STAMPA. - (2010), pp. 7618-7623. (Intervento presentato al convegno 2010 49th IEEE Conference on Decision and Control, CDC 2010 tenutosi a Atlanta, GA; USA nel 15-17 December 2010) [10.1109/CDC.2010.5717984].

Discrete-time models for gene transcriptional regulation networks

FARINA, Lorenzo;
2010

Abstract

The recent finding of functional motifs (by Uri Alon an co-workers) in gene regulatory networks has provided an important interpretative tool for systems biology. Despite the available models are made of continuous-time ordinary differential equations, the experimental data needed to validate such motifs in living cells are inherently discrete in time. Moreover, the technology is currently very expensive, so that an accurate choice of a limited number of samples is mandatory. In this paper we investigate the dynamical properties of network motifs under sampling and provide simple rules for choosing the appropriate sampling rate which preserves peculiar dynamical features for the most common network motifs.
2010
2010 49th IEEE Conference on Decision and Control, CDC 2010
Biological systems; Discrete-time systems; Gene transcription networks; Nonlinear systems; Control and Systems Engineering; Modeling and Simulation; Control and Optimization
04 Pubblicazione in atti di convegno::04b Atto di convegno in volume
Discrete-time models for gene transcriptional regulation networks / Cacace, Filippo; Farina, Lorenzo; Germani, Alfredo; Palumbo, Pasquale. - STAMPA. - (2010), pp. 7618-7623. (Intervento presentato al convegno 2010 49th IEEE Conference on Decision and Control, CDC 2010 tenutosi a Atlanta, GA; USA nel 15-17 December 2010) [10.1109/CDC.2010.5717984].
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