Finding causal relationships between genotypic and phenotypic variation is a key focus of evolutionary biology, human genetics and plant breeding. To identify genome-wide patterns underlying trait diversity, we assembled a high-quality reference genome of Cardamine hirsuta, a close relative of the model plant Arabidopsis thaliana. We combined comparative genome and transcriptome analyses with the experimental tools available in C. hirsuta to investigate gene function and phenotypic diversification. Our findings highlight the prevalent role of transcription factors and tandem gene duplications in morphological evolution. We identified a specific role for the transcriptional regulators PLETHORA5/7 in shaping leaf diversity and link tandem gene duplication with differential gene expression in the explosive seed pod of C. hirsuta. Our work highlights the value of comparative approaches in genetically tractable species to understand the genetic basis for evolutionary change.

The Cardamine hirsuta genome offers insight into the evolution of morphological diversity / Gan, Xiangchao; Hay, Angela; Kwantes, Michiel; Haberer, Georg; Hallab, Asis; DELLO IOIO, Raffaele; Hofhuis, Hugo; Pieper, Bjorn; Cartolano, Maria; Neumann, Ulla; Nikolov, Lachezar A.; Song, Baoxing; Hajheidari, Mohsen; Briskine, Roman; Kougioumoutzi, Evangelia; Vlad, Daniela; Broholm, Suvi; Hein, Jotun; Meksem, Khalid; Lightfoot, David; Shimizu, Kentaro K.; Shimizu Inatsugi, Rie; Imprialou, Martha; Kudrna, David; Wing, Rod; Sato, Shusei; Huijser, Peter; Filatov, Dmitry; Mayer, Klaus F. X.; Mott, Richard; Tsiantis, Miltos. - In: NATURE PLANTS. - ISSN 2055-0278. - 2:11(2016), pp. 1-7. [10.1038/nplants.2016.167]

The Cardamine hirsuta genome offers insight into the evolution of morphological diversity

DELLO IOIO, RAFFAELE;
2016

Abstract

Finding causal relationships between genotypic and phenotypic variation is a key focus of evolutionary biology, human genetics and plant breeding. To identify genome-wide patterns underlying trait diversity, we assembled a high-quality reference genome of Cardamine hirsuta, a close relative of the model plant Arabidopsis thaliana. We combined comparative genome and transcriptome analyses with the experimental tools available in C. hirsuta to investigate gene function and phenotypic diversification. Our findings highlight the prevalent role of transcription factors and tandem gene duplications in morphological evolution. We identified a specific role for the transcriptional regulators PLETHORA5/7 in shaping leaf diversity and link tandem gene duplication with differential gene expression in the explosive seed pod of C. hirsuta. Our work highlights the value of comparative approaches in genetically tractable species to understand the genetic basis for evolutionary change.
2016
stem-cell niche; arabidopsis-thaliana; brassicaceae phylogeny; leaf development; gene; duplication; sequence; origin; system; tandem
01 Pubblicazione su rivista::01a Articolo in rivista
The Cardamine hirsuta genome offers insight into the evolution of morphological diversity / Gan, Xiangchao; Hay, Angela; Kwantes, Michiel; Haberer, Georg; Hallab, Asis; DELLO IOIO, Raffaele; Hofhuis, Hugo; Pieper, Bjorn; Cartolano, Maria; Neumann, Ulla; Nikolov, Lachezar A.; Song, Baoxing; Hajheidari, Mohsen; Briskine, Roman; Kougioumoutzi, Evangelia; Vlad, Daniela; Broholm, Suvi; Hein, Jotun; Meksem, Khalid; Lightfoot, David; Shimizu, Kentaro K.; Shimizu Inatsugi, Rie; Imprialou, Martha; Kudrna, David; Wing, Rod; Sato, Shusei; Huijser, Peter; Filatov, Dmitry; Mayer, Klaus F. X.; Mott, Richard; Tsiantis, Miltos. - In: NATURE PLANTS. - ISSN 2055-0278. - 2:11(2016), pp. 1-7. [10.1038/nplants.2016.167]
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Utilizza questo identificativo per citare o creare un link a questo documento: https://hdl.handle.net/11573/944744
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