Two indicators of the hydropathicity of small solutes are introduced and tested by molecular dynamics simulations. These indicators are defined as probabilities of the orientation of water molecules' dipoles and hydrogen bond vectors, conditional on a generalized distance from the solute suitable for arbitrarily shaped molecules. Using conditional probabilities, it is possible to distinguish features of the distributions in close proximity of the solute. These regions contain the most significant information on the hydration structure but cannot be adequately represented by using, as is usually done, joint distance-angle probability densities. Our calculations show that using our indicators a relative hydropathicity scale for the interesting test set of the quaternary ammonium cations can be roughly determined.

Hydration Structure of the Quaternary Ammonium Cations / Wojtek Iwo, Babiaczyk; Bonella, Sara; Leonardo, Guidoni; Ciccotti, Giovanni. - In: JOURNAL OF PHYSICAL CHEMISTRY. B, CONDENSED MATTER, MATERIALS, SURFACES, INTERFACES & BIOPHYSICAL. - ISSN 1520-6106. - 114:46(2010), pp. 15018-15028. [10.1021/jp106282w]

Hydration Structure of the Quaternary Ammonium Cations

BONELLA, SARA;CICCOTTI, Giovanni
2010

Abstract

Two indicators of the hydropathicity of small solutes are introduced and tested by molecular dynamics simulations. These indicators are defined as probabilities of the orientation of water molecules' dipoles and hydrogen bond vectors, conditional on a generalized distance from the solute suitable for arbitrarily shaped molecules. Using conditional probabilities, it is possible to distinguish features of the distributions in close proximity of the solute. These regions contain the most significant information on the hydration structure but cannot be adequately represented by using, as is usually done, joint distance-angle probability densities. Our calculations show that using our indicators a relative hydropathicity scale for the interesting test set of the quaternary ammonium cations can be roughly determined.
2010
01 Pubblicazione su rivista::01a Articolo in rivista
Hydration Structure of the Quaternary Ammonium Cations / Wojtek Iwo, Babiaczyk; Bonella, Sara; Leonardo, Guidoni; Ciccotti, Giovanni. - In: JOURNAL OF PHYSICAL CHEMISTRY. B, CONDENSED MATTER, MATERIALS, SURFACES, INTERFACES & BIOPHYSICAL. - ISSN 1520-6106. - 114:46(2010), pp. 15018-15028. [10.1021/jp106282w]
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Utilizza questo identificativo per citare o creare un link a questo documento: https://hdl.handle.net/11573/377352
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