: We exploit Surface-Enhanced Raman Scattering (SERS) to investigate aqueous droplets of genomic DNA deposited onto silver-coated silicon nanowires, and we show that it is possible to efficiently discriminate between spectra of tumoral and healthy cells. To assess the robustness of the proposed technique, we develop two different statistical approaches, one based on the Principal Components Analysis of spectral data and one based on the computation of the ℓ2 distance between spectra. Both methods prove to be highly efficient, and we test their accuracy via the Cohen's κ statistics. We show that the synergistic combination of the SERS spectroscopy and the statistical analysis methods leads to efficient and fast cancer diagnostic applications allowing rapid and unexpansive discrimination between healthy and tumoral genomic DNA alternative to the more complex and expensive DNA sequencing.

Statistical Classification for Raman Spectra of Tumoral Genomic DNA / Durastanti, Claudio; Cirillo, Emilio; De Benedictis, Ilaria; Ledda, Mario; Sciortino, Antonio; Lisi, Antonella; Convertino, Annalisa; Mussi, Valentina. - In: MICROMACHINES. - ISSN 2072-666X. - 13:9(2022), p. 1388. [10.3390/mi13091388]

Statistical Classification for Raman Spectra of Tumoral Genomic DNA

Durastanti, Claudio;Cirillo, Emilio;De Benedictis, Ilaria;
2022

Abstract

: We exploit Surface-Enhanced Raman Scattering (SERS) to investigate aqueous droplets of genomic DNA deposited onto silver-coated silicon nanowires, and we show that it is possible to efficiently discriminate between spectra of tumoral and healthy cells. To assess the robustness of the proposed technique, we develop two different statistical approaches, one based on the Principal Components Analysis of spectral data and one based on the computation of the ℓ2 distance between spectra. Both methods prove to be highly efficient, and we test their accuracy via the Cohen's κ statistics. We show that the synergistic combination of the SERS spectroscopy and the statistical analysis methods leads to efficient and fast cancer diagnostic applications allowing rapid and unexpansive discrimination between healthy and tumoral genomic DNA alternative to the more complex and expensive DNA sequencing.
2022
Raman spectroscopy; classification; logistic regression; minimum distance classifiers; principal component analysis; tumoral genomic DNA
01 Pubblicazione su rivista::01a Articolo in rivista
Statistical Classification for Raman Spectra of Tumoral Genomic DNA / Durastanti, Claudio; Cirillo, Emilio; De Benedictis, Ilaria; Ledda, Mario; Sciortino, Antonio; Lisi, Antonella; Convertino, Annalisa; Mussi, Valentina. - In: MICROMACHINES. - ISSN 2072-666X. - 13:9(2022), p. 1388. [10.3390/mi13091388]
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Utilizza questo identificativo per citare o creare un link a questo documento: https://hdl.handle.net/11573/1674344
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