Protein kinases are therapeutic targets for many human diseases, but the lack of user-friendly quantitative assays limits the ability to follow the activities of numerous kinases at once (multiplexing). To develop such an assay, we report an array of sulfonamido-oxine (SOX)-labeled peptides showing cross-reactivity to different mitogen-activated protein kinases (MAPKs) for use in a differential sensing scheme. We first verified using linear discriminant analysis that the array could differentiate MAPK isoforms. Then, using principal component analysis, the array was optimized based on the discrimination imparted by each SOX-peptide. Next, the activity of individual MAPK families in ternary mixtures was quantified by support vector machine regression. Finally, we multiplexed the quantification of three MAPK families using partial least squares regression in A549 cell lysates, which has possible interference from other kinase classes. Thus, our method simultaneously quantifies the activity of multiple kinases. The technique could be applied to other protein kinase families and the monitoring of diseases.

Multiplexing the Quantitation of MAP Kinase Activities Using Differential Sensing / Zeng, L.; Kaoud, T. S.; Zamora-Olivares, D.; Bohanon, A. L.; Li, Y.; Pridgen, J. R.; Ekpo, Y. E.; Zhuang, D. L.; Nye, J. R.; Telles, M.; Winkler, M.; Rivera, S.; Marini, F.; Dalby, K. N.; Anslyn, E. V.. - In: JOURNAL OF THE AMERICAN CHEMICAL SOCIETY. - ISSN 0002-7863. - 144:9(2022), pp. 4017-4025. [10.1021/jacs.1c12757]

Multiplexing the Quantitation of MAP Kinase Activities Using Differential Sensing

Marini F.
;
2022

Abstract

Protein kinases are therapeutic targets for many human diseases, but the lack of user-friendly quantitative assays limits the ability to follow the activities of numerous kinases at once (multiplexing). To develop such an assay, we report an array of sulfonamido-oxine (SOX)-labeled peptides showing cross-reactivity to different mitogen-activated protein kinases (MAPKs) for use in a differential sensing scheme. We first verified using linear discriminant analysis that the array could differentiate MAPK isoforms. Then, using principal component analysis, the array was optimized based on the discrimination imparted by each SOX-peptide. Next, the activity of individual MAPK families in ternary mixtures was quantified by support vector machine regression. Finally, we multiplexed the quantification of three MAPK families using partial least squares regression in A549 cell lysates, which has possible interference from other kinase classes. Thus, our method simultaneously quantifies the activity of multiple kinases. The technique could be applied to other protein kinase families and the monitoring of diseases.
2022
differential sensing; mitogen-activated protein kinases (MAPKs); sulfonamido-oxine (SOX)-labeled peptides; chemometrics; partial least squares (PLS)
01 Pubblicazione su rivista::01a Articolo in rivista
Multiplexing the Quantitation of MAP Kinase Activities Using Differential Sensing / Zeng, L.; Kaoud, T. S.; Zamora-Olivares, D.; Bohanon, A. L.; Li, Y.; Pridgen, J. R.; Ekpo, Y. E.; Zhuang, D. L.; Nye, J. R.; Telles, M.; Winkler, M.; Rivera, S.; Marini, F.; Dalby, K. N.; Anslyn, E. V.. - In: JOURNAL OF THE AMERICAN CHEMICAL SOCIETY. - ISSN 0002-7863. - 144:9(2022), pp. 4017-4025. [10.1021/jacs.1c12757]
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Utilizza questo identificativo per citare o creare un link a questo documento: https://hdl.handle.net/11573/1624884
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