DNA metabarcoding and massive parallel sequencing are valuable molecular tools for the characterization of environmental samples. In forensic sciences, the analysis of the sample’s fungal population can be highly informative for the estimation of post-mortem interval, the ascertainment of deposition time, the identification of the cause of death, or the location of buried corpses. Unfortunately, metabarcoding data analysis often requires strong bioinformatic capabilities that are not widely available in forensic laboratories. The present paper describes the adoption of a user-friendly cloud-based application for the identification of fungi in typical forensic samples. The samples have also been analyzed through the QIIME pipeline, obtaining a relevant data concordance on top genus classification results (88%).The availability of a user-friendly application that can be run without command line activities will increase the popularity of metabarcoding fungal analysis in forensic samples.

DNA metabarcoding of forensic mycological samples / Giampaoli, Saverio; De Vittori, Elisabetta; Barni, Filippo; Anselmo, Anna; Rinaldi, Teresa; Baldi, Marina; Charles Miranda, Kevin; Liao, Arnold; Brami, Daniel; Berti., Giovanni Vanni Frajese and Andrea. - In: EGYPTIAN JOURNAL OF FORENSIC SCIENCES. - ISSN 2090-5939. - 11:7(2021). [10.1186/s41935-021-00221-x]

DNA metabarcoding of forensic mycological samples

Teresa Rinaldi;
2021

Abstract

DNA metabarcoding and massive parallel sequencing are valuable molecular tools for the characterization of environmental samples. In forensic sciences, the analysis of the sample’s fungal population can be highly informative for the estimation of post-mortem interval, the ascertainment of deposition time, the identification of the cause of death, or the location of buried corpses. Unfortunately, metabarcoding data analysis often requires strong bioinformatic capabilities that are not widely available in forensic laboratories. The present paper describes the adoption of a user-friendly cloud-based application for the identification of fungi in typical forensic samples. The samples have also been analyzed through the QIIME pipeline, obtaining a relevant data concordance on top genus classification results (88%).The availability of a user-friendly application that can be run without command line activities will increase the popularity of metabarcoding fungal analysis in forensic samples.
2021
NGS, Fungi, Data analysis, Metabarcoding, Forensic science
01 Pubblicazione su rivista::01a Articolo in rivista
DNA metabarcoding of forensic mycological samples / Giampaoli, Saverio; De Vittori, Elisabetta; Barni, Filippo; Anselmo, Anna; Rinaldi, Teresa; Baldi, Marina; Charles Miranda, Kevin; Liao, Arnold; Brami, Daniel; Berti., Giovanni Vanni Frajese and Andrea. - In: EGYPTIAN JOURNAL OF FORENSIC SCIENCES. - ISSN 2090-5939. - 11:7(2021). [10.1186/s41935-021-00221-x]
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Utilizza questo identificativo per citare o creare un link a questo documento: https://hdl.handle.net/11573/1538083
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