The transversal tunneling current flowing across a narrow nanogap is employed for amino acids recognition in polypeptides during their translocation across the nanogap. An ideal device, consisting of a nanogap in graphene nanoribbons, is considered for this purpose to exploit the ideal atomistic resolution of 2D electrodes. Using the non equilibrium Green function scheme, based on the density functional theory, we have studied the trigger signal that can be collected from the backbone of some template peptides showing that this signal is practically independent on the polarity of the AAs considered. Both X (Asn, Ala, Asp) homo peptides and Gly-X etero peptides have been considered showing that the major role is played by the electrons injected through the CαH group and the partially resonant peptide bonds. Due to the smaller overall transversal size in relation to the graphene nanoribbon width, the X side chain is only partially involved in the electron injection for Gly-X etero peptides, but no role is played by the polar ends. These results encourage the search of unique triggering signals related to the passage of each residue during translocation by atomic resolved tunneling currents.

Triggering Amino Acid Detection by Atomistic Resolved Tunneling Current Signals in Graphene Nanoribbon Devices for Peptide Sequencing / Civitarese, Tommaso; Zollo, Giuseppe. - In: ACS APPLIED NANO MATERIALS. - ISSN 2574-0970. - (2020). [10.1021/acsanm.0c02720]

Triggering Amino Acid Detection by Atomistic Resolved Tunneling Current Signals in Graphene Nanoribbon Devices for Peptide Sequencing

Tommaso Civitarese
Primo
;
Giuseppe Zollo
Secondo
2020

Abstract

The transversal tunneling current flowing across a narrow nanogap is employed for amino acids recognition in polypeptides during their translocation across the nanogap. An ideal device, consisting of a nanogap in graphene nanoribbons, is considered for this purpose to exploit the ideal atomistic resolution of 2D electrodes. Using the non equilibrium Green function scheme, based on the density functional theory, we have studied the trigger signal that can be collected from the backbone of some template peptides showing that this signal is practically independent on the polarity of the AAs considered. Both X (Asn, Ala, Asp) homo peptides and Gly-X etero peptides have been considered showing that the major role is played by the electrons injected through the CαH group and the partially resonant peptide bonds. Due to the smaller overall transversal size in relation to the graphene nanoribbon width, the X side chain is only partially involved in the electron injection for Gly-X etero peptides, but no role is played by the polar ends. These results encourage the search of unique triggering signals related to the passage of each residue during translocation by atomic resolved tunneling currents.
2020
Density Functional Theory, non equilibrium Green function, protein sequencing, amino acid recognition, graphene nanoribbons
01 Pubblicazione su rivista::01a Articolo in rivista
Triggering Amino Acid Detection by Atomistic Resolved Tunneling Current Signals in Graphene Nanoribbon Devices for Peptide Sequencing / Civitarese, Tommaso; Zollo, Giuseppe. - In: ACS APPLIED NANO MATERIALS. - ISSN 2574-0970. - (2020). [10.1021/acsanm.0c02720]
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Utilizza questo identificativo per citare o creare un link a questo documento: https://hdl.handle.net/11573/1469743
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