In this paper we introduce a GPU-based reformulation of the distributed MEC algorithm for the error correction of pair-end short reads. Our proposal allows for a deep parallelization of two of the most computationally heavy steps of the original algorithm while using a GPU processing unit rather than a traditional distributed supercomputing facility.
Partial Parallel Error Correction of Pair-end Short Reads using GPU / Palini, Francesco; FERRARO PETRILLO, Umberto. - (2018), pp. 2114-2116. (Intervento presentato al convegno 2018 IEEE International Conference on Bioinformatics and Biomedicine (BIBM) tenutosi a Madrid) [10.1109/BIBM.2018.8621324].
Partial Parallel Error Correction of Pair-end Short Reads using GPU
Francesco Palini;Umberto FERRARO-PETRILLO
2018
Abstract
In this paper we introduce a GPU-based reformulation of the distributed MEC algorithm for the error correction of pair-end short reads. Our proposal allows for a deep parallelization of two of the most computationally heavy steps of the original algorithm while using a GPU processing unit rather than a traditional distributed supercomputing facility.I documenti in IRIS sono protetti da copyright e tutti i diritti sono riservati, salvo diversa indicazione.