PERFETTO, Livia

PERFETTO, Livia  

DIPARTIMENTO DI BIOLOGIA E BIOTECNOLOGIE "CHARLES DARWIN"  

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A coordinated approach by public domain bioinformatics resources to aid the fight against Alzheimer's disease through expert curation of key protein targets 2020 Breuza, L; Arighi, Cn; Argoud-Puy, G; Casals-Casas, C; Estreicher, A; Famiglietti, Ml; Georghiou, G; Gos, A; Gruaz-Gumowski, N; Hinz, U; Hyka-Nouspikel, N; Kramarz, B; Lovering, Rc; Lussi, Y; Magrane, M; Masson, P; Perfetto, L; Poux, S; Rodriguez-Lopez, M; Stoeckert, C; Sundaram, S; Wang, Ls; Wu, El; Orchard, S
A key role of the WEE1-CDK1 axis in mediating TKI-therapy resistance in FLT3-ITD positive acute myeloid leukemia patients 2022 Massacci, Giorgia; Venafra, Veronica; Latini, Sara; Bica, Valeria; Pugliese, Giusj Monia; Graziosi, Simone; Klingelhuber, Felix; Krahmer, Natalie; Fischer, Thomas; Mougiakakos, Dimitrios; Boettcher, Martin; Perfetto, Livia; Sacco, Francesca
A resource for the network representation of cell perturbations caused by SARS-CoV-2 infection 2021 Perfetto, L; Micarelli, E; Iannuccelli, M; Lo Surdo, P; Giuliani, G; Latini, S; Pugliese, Gm; Massacci, G; Vumbaca, S; Riccio, F; Fuoco, C; Paoluzi, S; Castagnoli, L; Cesareni, G; Licata, L; Sacco, F
A resource to infer molecular paths linking cancer mutations to perturbation of cell metabolism 2022 Iannuccelli, M; Lo Surdo, P; Licata, L; Castagnoli, L; Cesareni, G; Perfetto, L
Analysing the yeast complexome-the Complex Portal rising to the challenge 2021 Meldal, Bhm; Pons, C; Perfetto, L; Del-Toro, N; Wong, E; Aloy, P; Hermjakob, H; Orchard, S; Porras, P
Assembling disease networks from causal interaction resources 2021 Cesareni, G; Sacco, F; Perfetto, L
Assessment of network module identification across complex diseases 2019 Choobdar, S; Ahsen, Me; Crawford, J; Tomasoni, M; Fang, T; Lamparter, D; Lin, Jy; Hescott, B; Hu, Xz; Mercer, J; Natoli, T; Narayan, R; Aicheler, F; Amoroso, N; Arenas, A; Azhagesan, K; Baker, A; Banf, M; Batzoglou, S; Baudot, A; Bellotti, R; Bergmann, S; Boroevich, Ka; Brun, C; Cai, S; Caldera, M; Calderone, A; Cesareni, G; Chen, Wq; Chichester, C; Cowen, L; Cui, Hz; Dao, P; De Domenico, M; Dhroso, A; Didier, G; Divine, M; del Sol, A; Feng, Xy; Flores-Canales, Jc; Fortunato, S; Gitter, A; Gorska, A; Guan, Yf; Guenoche, A; Gomez, S; Hamza, H; Hartmann, A; He, S; Heijs, A; Heinrich, J; Hu, Y; Huang, Xq; Hughitt, Vk; Jeon, M; Jeub, L; Johnson, Nt; Joo, K; Joung, I; Jung, S; Kalko, Sg; Kamola, Pj; Kang, J; Kaveelerdpotjana, B; Kim, M; Kim, Ya; Kohlbacher, O; Korkin, D; Krzysztof, K; Kunji, K; Kutalik, Z; Lage, K; Lang-Brown, S; Le, Td; Lee, J; Lee, S; Lee, J; Li, D; Li, Jy; Liu, L; Loizou, A; Luo, Zh; Lysenko, A; Ma, Tl; Mall, R; Marbach, D; Mattia, T; Medvedovic, M; Menche, J; Micarelli, E; Monaco, A; Mueller, F; Narykov, O; Norman, T; Park, S; Perfetto, L; Perrin, D; Pirro, S; Przytycka, Tm; Qian, Xn; Raman, K; Ramazzotti, D; Ramsahai, E; Ravindran, B; Rennert, P; Saez-Rodriguez, J; Scharfe, C; Sharan, R; Shi, N; Shin, W; Shu, H; Sinha, H; Slonim, Dk; Spinelli, L; Srinivasan, S; Subramanian, A; Suver, C; Szklarczyk, D; Tangaro, S; Thiagarajan, S; Tichit, L; Tiede, T; Tripathi, B; Tsherniak, A; Tsunoda, T; Turei, D; Ullah, E; Vahedi, G; Valdeolivas, A; Vivek, J; von Mering, C; Waagmeester, A; Wang, B; Wang, Yj; Weir, Ba; White, S; Winkler, S; Xu, K; Xu, Ts; Yan, Ch; Yang, Lq; Yu, Kx; Yu, Xt; Zaffaroni, G; Zaslavskiy, M; Zeng, T; Zhang, Jtd; Zhang, L; Zhang, Wj; Zhang, L; Zhang, Xy; Zhang, Jp; Zhou, X; Zhou, Jr; Zhu, Ht; Zhu, Jj; Zuccon, G; Stolovitzky, G; Kutalik, Z; Lage, K; Slonim, Dk; Saez-Rodriguez, J; Cowen, Lj; Bergmann, S; Marbach, D
Benchmarking of the 2010 BioCreative Challenge III text-mining competition by the BioGRID and MINT interaction databases 2011 Chatr-Aryamontri, A; Winter, A; Perfetto, L; Briganti, L; Licata, L; Iannuccelli, M; Castagnoli, L; Cesareni, G; Tyers, M
BioCreative III interactive task: an overview 2011 Arighi, Cn; Roberts, Pm; Agarwal, S; Bhattacharya, S; Cesareni, G; Chatr-Aryamontri, A; Clematide, S; Gaudet, P; Giglio, Mg; Harrow, I; Huala, E; Krallinger, M; Leser, U; Li, D; Liu, F; Lu, Z; Maltais, Lj; Okazaki, N; Perfetto, L; Rinaldi, F; Sætre, R; Salgado, D; Srinivasan, P; Thomas, Pe; Toldo, L; Hirschman, L; Wu, Ch
CancerGeneNet: linking driver genes to cancer hallmarks 2020 Iannuccelli, M; Micarelli, E; Lo Surdo, P; Palma, A; Perfetto, L; Rozzo, I; Castagnoli, L; Licata, L; Cesareni, G
Capturing variation impact on molecular interactions in the IMEx Consortium mutations data set 2019 Del-Toro, N; Duesbury, M; Koch, M; Perfetto, L; Shrivastava, A; Ochoa, D; Wagih, O; Piñero, J; Kotlyar, M; Pastrello, C; Beltrao, P; Furlong, L I; Jurisica, I; Hermjakob, H; Orchard, S; Porras, P
CausalTAB: the PSI-MITAB 2.8 updated format for signalling data representation and dissemination 2019 Perfetto, L; Acencio, M L; Bradley, G; Cesareni, G; Del Toro, N; Fazekas, D; Hermjakob, H; Korcsmaros, T; Kuiper, M; Lægreid, A; Lo Surdo, P; Lovering, R C; Orchard, S; Porras, P; Thomas, P D; Touré, V; Zobolas, J; Licata, L
Combining mass spectrometry-based phosphoproteomics with a network-based approach to reveal FLT3-dependent mechanisms of chemoresistance 2021 Pugliese, Gm; Latini, S; Massacci, G; Perfetto, L; Sacco, F
Combining phosphoproteomics datasets and literature information to reveal the functional connections in a cell phosphorylation network 2018 Sacco, F; Perfetto, L; Cesareni, G
Community assessment to advance computational prediction of cancer drug combinations in a pharmacogenomic screen 2019 Menden, Mp; Wang, D; Mason, Mj; Szalai, B; Bulusu, Kc; Guan, Yf; Yu, T; Kang, J; Jeon, M; Wolfinger, R; Nguyen, T; Zaslavskiy, M; Jang, Is; Ghazoui, Z; Ahsen, Me; Vogel, R; Neto, Ec; Norman, T; Tang, Eky; Garnett, Mj; Di Veroli, Gy; Fawell, S; Stolovitzky, G; Guinney, J; Dry, Jr; Saez-Rodriguez, J; Abante, J; Abecassis, Bs; Aben, N; Aghamirzaie, D; Aittokallio, T; Akhtari, Fs; Al-lazikani, B; Alam, T; Allam, A; Allen, C; de Almeida, Mp; Altarawy, D; Alves, V; Amadoz, A; Anchang, B; Antolin, Aa; Ash, Jr; Aznar, Vr; Ba-alawi, W; Bagheri, M; Bajic, V; Ball, G; Ballester, Pj; Baptista, D; Bare, C; Bateson, M; Bender, A; Bertrand, D; Wijayawardena, B; Boroevich, Ka; Bosdriesz, E; Bougouffa, S; Bounova, G; Brouwer, T; Bryant, B; Calaza, M; Calderone, A; Calza, S; Capuzzi, S; Carbonell-Caballero, J; Carlin, D; Carter, H; Castagnoli, L; Celebi, R; Cesareni, G; Chang, H; Chen, Gc; Chen, Hr; Chen, Hy; Cheng, Lj; Chernomoretz, A; Chicco, D; Cho, Kh; Cho, S; Choi, D; Choi, J; Choi, K; Choi, M; De Cock, M; Coker, E; Cortes-Ciriano, I; Cserzo, M; Cubuk, C; Curtis, C; Van Daele, D; Dang, Cc; Dijkstra, T; Dopazo, J; Draghici, S; Drosou, A; Dumontier, M; Ehrhart, F; Eid, Fe; Elhefnawi, M; Elmarakeby, H; van Engelen, B; Engin, Hb; de Esch, I; Evelo, C; Falcao, Ao; Farag, S; Fernandez-Lozano, C; Fisch, K; Flobak, A; Fornari, C; Foroushani, Abk; Fotso, Dc; Fourches, D; Friend, S; Frigessi, A; Gao, F; Gao, Xt; Gerold, Jm; Gestraud, P; Ghosh, S; Gillberg, J; Godoy-Lorite, A; Godynyuk, L; Godzik, A; Goldenberg, A; Gomez-Cabrero, D; Gonen, M; de Graaf, C; Gray, H; Grechkin, M; Guimera, R; Guney, E; Haibe-Kains, B; Han, Y; Hase, T; He, D; He, Ly; Heath, Ls; Hellton, Kh; Helmer-Citterich, M; Hidalgo, Mr; Hidru, D; Hill, Sm; Hochreiter, S; Hong, S; Hovig, E; Hsueh, Yc; Hu, Zy; Huang, Jk; Huang, Rs; Hunyady, L; Hwang, J; Hwang, Th; Hwang, W; Hwang, Y; Isayev, O; Walk, Obd; Jack, J; Jahandideh, S; Ji, Jd; Jo, Y; Kamola, Pj; Kanev, Gk; Karacosta, L; Karimi, M; Kaski, S; Kazanov, M; Khamis, Am; Khan, Sa; Kiani, Na; Kim, A; Kim, J; Kim, J; Kim, K; Kim, K; Kim, S; Kim, Y; Kim, Y; Kirk, Pdw; Kitano, H; Klambauer, G; Knowles, D; Ko, M; Kohn-Luque, A; Kooistra, Aj; Kuenemann, Ma; Kuiper, M; Kurz, C; Kwon, M; van Laarhoven, T; Laegreid, A; Lederer, S; Lee, H; Lee, J; Lee, Yw; Leppaho, E; Lewis, R; Li, J; Li, L; Liley, J; Lim, Wk; Lin, C; Liu, Yy; Lopez, Y; Low, J; Lysenko, A; Machado, D; Madhukar, N; De Maeyer, D; Malpartida, Ab; Mamitsuka, H; Marabita, F; Marchal, K; Marttinen, P; Mason, D; Mazaheri, A; Mehmood, A; Mehreen, A; Michaut, M; Miller, Ra; Mitsopoulos, C; Modos, D; Van Moerbeke, M; Moo, K; Motsinger-Reif, A; Movva, R; Muraru, S; Muratov, E; Mushthofa, M; Nagarajan, N; Nakken, S; Nath, A; Neuvial, P; Newton, R; Ning, Z; De Niz, C; Oliva, B; Olsen, C; Palmeri, A; Panesar, B; Papadopoulos, S; Park, J; Park, S; Park, S; Pawitan, Y; Peluso, D; Pendyala, S; Peng, J; Perfetto, L; Pirro, S; Plevritis, S; Politi, R; Poon, H; Porta, E; Prellner, I; Preuer, K; Pujana, Ma; Ramnarine, R; Reid, Je; Reyal, F; Richardson, S; Ricketts, C; Rieswijk, L; Rocha, M; Rodriguez-Gonzalvez, C; Roell, K; Rotroff, D; de Ruiter, Jr; Rukawa, P; Sadacca, B; Safikhani, Z; Safitri, F; Sales-Pardo, M; Sauer, S; Schlichting, M; Seoane, Ja; Serra, J; Shang, Mm; Sharma, A; Sharma, H; Shen, Y; Shiga, M; Shin, M; Shkedy, Z; Shopsowitz, K; Sinai, S; Skola, D; Smirnov, P; Soerensen, If; Soerensen, P; Song, Jh; Song, So; Soufan, O; Spitzmueller, A; Steipe, B; Suphavilai, C; Tamayo, Sp; Tamborero, D; Tang, J; Tanoli, Zur; Tarres-Deulofeu, M; Tegner, J; Thommesen, L; Tonekaboni, Sam; Tran, H; De Troyer, E; Truong, A; Tsunoda, T; Turu, G; Tzeng, Gy; Verbeke, L; Videla, S; Vis, D; Voronkov, A; Votis, K; Wang, A; Wang, Hqh; Wang, Pw; Wang, S; Wang, W; Wang, Xc; Wang, X; Wennerberg, K; Wernisch, L; Wessels, L; van Westen, Gjp; Westerman, Ba; White, Sr; Willighagen, E; Wurdinger, T; Xie, L; Xie, Sl; Xu, H; Yadav, B; Yau, C; Yeerna, H; Yin, Jw; Yu, M; Yu, M; Yun, Sj; Zakharov, A; Zamichos, A; Zanin, M; Zeng, L; Zenil, H; Zhang, F; Zhang, Py; Zhang, W; Zhao, Hy; Zhao, L; Zheng, Wj; Zoufir, A; Zucknick, M
Complex Portal 2018: extended content and enhanced visualization tools for macromolecular complexes 2019 Meldal, Bhm; Bye-A-Jee, H; Gajdos, L; Hammerova, Z; Horackova, A; Melicher, F; Perfetto, L; Pokorny, D; Lopez, Mr; Turkova, A; Wong, Ed; Xie, Zy; Casanova, Eb; del-Toro, N; Koch, M; Porras, P; Hermjakob, H; Orchard, S
Complex Portal 2022: new curation frontiers 2022 Meldal, Bhm; Perfetto, L; Combe, C; Lubiana, T; Cavalcante, Jvf; Bye-A-Jee, H; Waagmeester, A; Del-Toro, N; Shrivastava, A; Barrera, E; Wong, E; Mlecnik, B; Bindea, G; Panneerselvam, K; Willighagen, E; Rappsilber, J; Porras, P; Hermjakob, H; Orchard, S
DISNOR: a disease network open resource 2018 Lo Surdo, P; Calderone, A; Iannuccelli, M; Licata, L; Peluso, D; Castagnoli, L; Cesareni, G; Perfetto, L
Exploring the diversity of SPRY/B30.2-mediated interactions 2013 Perfetto, L; Gherardini, Pf; Davey, Ne; Diella, F; Helmer-Citterich, M; Cesareni, G
HuPho: the human phosphatase portal 2013 Liberti, S; Sacco, F; Calderone, A; Perfetto, L; Iannuccelli, M; Panni, S; Santonico, E; Palma, A; Nardozza, Ap; Castagnoli, L; Cesareni, G