Sfoglia per Autore
Protein surface similarities: a survey of methods to describe and compare protein surfaces. Cell Mol Life Sci., 57 (13-14):1970-7. Review.
2000 Via, Allegra; Ferre, F; Brannetti, B; HELMER CITTERICH, M.
3D view of the surface motif associated to the ploop structure: cis and trans cases of convergent evolution. J. Mol. Biol., 303 (4): 455-65.
2000 Via, Allegra; Ferre, F; Brannetti, B; Valencia, A; HELMER CITTERICH, M.
SH3-SPOT:an algorithm to predict preferred ligands to different members of sh3 gene family
2000 Brannetti, B; Via, Allegra; Cesareni, G; HELMER CITTERICH, M.
Theoretical aspects of Protein Sequence Alignments
2002 Brannetti, B.; Via, Allegra
Practical aspects of Protein Sequence Analysis
2002 Via, Allegra
The ELM server: A new source for revealing short functional sites in modular eukaryotic proteins. Nucleic Acids Res., 31(13):3625-30.
2003 Puntervoll, P; Linding, R; Gemnd, C; CHABANIS DAVIDSON, S; Ramu, C; Mattingsdal, M; Cameron, S; MARTIN D. M., A; Ausiello, G; Brannetti, B; Costantini, A; Ferr, F; Maselli, V; Via, Allegra; Cesareni, G; Diella, F; SUPERTI FURGA, G; Wyrwicz, L; Mcguigan, C; Gudavalli, R; Letunic, I; Bork, P; Rychlewski, L; Kster, B; HELMER CITTERICH, M; HUNTER W., N; Aasland, R.; Gibson, T. J.
Development of computational tools for the inference of protein interaction specificity rules and functional annotation using structural information.
2003 Ferre, F; Via, Allegra; Ausiello, G; Brannetti, B; Zanzoni, A.; HELMER CITTERICH, M.
A structural study for the optimisation of functional motifs encoded in protein sequences
2004 Via, Allegra; M., Helmer Citterich
Phospho.ELM: A database of experimentally verified phosphorylation sites in eukaryotic proteins
2004 F., Diella; S., Cameron; C., Gemund; R., Linding; Via, Allegra; B., Kuster; T., Sicheritz Ponten; N., Blom; T. J., Gibson
Seq2Struct: a resource for establishing sequence-structure links
2005 Via, Allegra; A., Zanzoni; M., Helmer Citterich
Query3d: a new method for high- throughput analysis of functional residues in protein structures.
2005 Ausiello, G; Via, Allegra; HELMER CITTERICH, M.
A neural strategy for the inference of SH3 domain-peptide interaction specificity
2005 Enrico, Ferraro; Via, Allegra; Gabriele, Ausiello; Manuela Helmer, Citterich
pdbFun: Mass selection and fast comparison of annotated PDB residues.
2005 Ausiello, G; Zanzoni, A; Peluso, D; Via, Allegra; HELMER CITTERICH, M.
A novel structure-based encoding for machine-learning applied to the prediction of SH3 domain specificity.
2006 Ferraro, E; Via, Allegra; Ausiello, G.; HELMER CITTERICH, M.
False occurrences of functional motifs in protein sequences highlight evolutionary constraints
2007 Via, Allegra; F., Gherardini; Enrico, Ferraro; Gabriele, Ausiello; Gianpaolo Scalia, Tomba; Manuela Helmer, Citterich
Phospho3D: a database of three-dimensional structures of protein phosphorylation sites
2007 A., Zanzoni; Ausiello, Gabriele; Via, Allegra; P. F., Gherardini; M., Helmer Citterich
3dLOGO: a web server for the identification, analysis and use of conserved protein substructures
2007 Via, Allegra; D., Peluso; P. F., Gherardini; E., De Rinaldis; Colombo, Teresa; G., Ausiello; M., Helmer Citterich
SH3-Hunter: discovery of SH3 domain interaction sites in proteins
2007 E., Ferraro; D., Peluso; Via, Allegra; G., Ausiello; M., Helmer Citterich
Local comparison of protein structures highlights cases of convergent evolution in analogous functional sites
2007 Gabriele, Ausiello; Daniele, Peluso; Via, Allegra; Manuela Helmer, Citterich
FunClust: a web server for the identification of structural motifs in a set of non-homologous protein structures
2008 Ausiello, G; GHERARDINI P., F; Marcatili, Paolo; Tramontano, Anna; Via, Allegra; HELMER CITTERICH, E.
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